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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28705877_28713260_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28705877 - 28713260
Intron Length:
7384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTACAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
AGTTCAGTAATC
Flanking Amino Acid:
LDKHLESRVEEIMEKSGEEG
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
71.4
0.48
0.9
67.8
37.7
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
49.7
-0
2.2
66.84
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017580
28683501 - 28721551
38051
ENSAPLT00000048047
28683501 - 28724987
41487
ENSAPLT00000009205
28693087 - 28720706
27620
ENSAPLT00000028715
28693700 - 28715513
21814
ENSAPLT00000027602
28685799 - 28715513
29715
ENSAPLT00000023334
28693087 - 28724987
31901