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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28713373_28715401_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28713373 - 28715401
Intron Length:
2029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTTTGCAACT
Flanking Amino Acid:
NLPPGGGLAGKRNIIEAVYS
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.5
28.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.8
0.8
0.6
84.7
23
Minor 5ss
32.3
-2
2.6
35.1
34.3
Minor BPS
55.7
0.26
2.2
83.3
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017580
28683501 - 28721551
38051
ENSAPLT00000048047
28683501 - 28724987
41487
ENSAPLT00000009205
28693087 - 28720706
27620
ENSAPLT00000028715
28693700 - 28715513
21814
ENSAPLT00000027602
28685799 - 28715513
29715
ENSAPLT00000023334
28693087 - 28724987
31901