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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28715460_28720679_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28715460 - 28720679
Intron Length:
5220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCATGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTTCTCTCATG
Flanking Amino Acid:
RLNPHRENEGQNACRNQS*
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
73.3
0.53
1
69.8
35.2
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
51
-0.1
2.1
67.5
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009205
28693087 - 28720706
27620