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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28735515_28736868_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
28735515 - 28736868
Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGATGT
5'SS Class:
major
3'SS Sequence:
CCACTGAACAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCCACTGAACA
Flanking Amino Acid:
MYAGSLPCCS
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
70.6
36
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
48.3
-0.1
1.1
44.5
34.2
Minor 5ss
36.6
-1.5
3.3
51.9
45
Minor BPS
59.2
0.29
1.7
71.21
40.3

Associated Gene:

Gene:
SLC3A1
Ensembl Gene ID:
ENSAPLG00000008564
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008926
28735270 - 28750393
15124