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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28752661_28753054_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28752661 - 28753054
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTCATTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GCTGGCTTCATT
Flanking Amino Acid:
LDHAGRTKKKGNWIPNIILD
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.8
0.69
0.9
72.6
42.2
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
46.1
-0.2
2.2
63.65
47.2

Associated Gene:

Gene:
PREPL
Ensembl Gene ID:
ENSAPLG00000008267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008632
28750752 - 28769185
18434
ENSAPLT00000025955
28751761 - 28769185
17425