Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28754708_28756150_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28754708 - 28756150

Intron Length:

1443

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTAAATTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

ATTATTTTAAAT

Flanking Amino Acid:

EGWILAYCHVRGGGELGHSW

Intron Amino Acid Position:

492

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.1

1.06

0.7

83.2

30.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

80.7

0.69

0.9

71.5

42.8

Minor 5ss

33.5

-1.9

2.9

40.7

45.5

Minor BPS

66.3

0.59

1.4

80.02

35.4

Associated Gene:

Gene:

PREPL

Ensembl Gene ID:

ENSAPLG00000008267

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025955

28751761 - 28769185

17425

ENSAPLT00000008632

28750752 - 28769185

18434