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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28758684_28758791_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28758684 - 28758791
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TTTGTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATCAC
U12 Branch Point Sequence:
TGTTCAGTGATC
Flanking Amino Acid:
PAEYKLMKAPNAGHLYLNVI
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
69.9
35.6
Major BPS
63.2
0.33
1.2
65.7
41
Major PPT
86.8
0.83
0.7
81.7
30.4
Minor 5ss
43.7
-0.7
2.7
59.7
38.5
Minor BPS
48.5
-0.1
2.3
67.53
38.3

Associated Gene:

Gene:
PREPL
Ensembl Gene ID:
ENSAPLG00000008267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008632
28750752 - 28769185
18434