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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28758807_28759236_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28758807 - 28759236
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TATATCTTAGTA
Flanking Amino Acid:
LWKGRLERHQLMKAPVSSSG
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
75.7
29.3
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
85.9
0.81
0.9
79.9
37.7
Minor 5ss
43.3
-0.7
2.8
55.5
48.7
Minor BPS
59.8
0.3
1.6
69.02
37.3

Associated Gene:

Gene:
PREPL
Ensembl Gene ID:
ENSAPLG00000008267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025955
28751761 - 28769185
17425