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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28758807_28760499_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28758807 - 28760499
Intron Length:
1693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TATATCTTAGTA
Flanking Amino Acid:
TTYGEPAEYKLMKAPNAGHL
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
76.9
34.6
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
85.9
0.81
0.9
79.9
37.7
Minor 5ss
47.5
-0.2
2.8
64.9
46.3
Minor BPS
59.8
0.3
1.6
69.02
37.3

Associated Gene:

Gene:
PREPL
Ensembl Gene ID:
ENSAPLG00000008267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008632
28750752 - 28769185
18434