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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28776332_28784511_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28776332 - 28784511
Intron Length:
8180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCATC
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATGTTGGTAAGT
Flanking Amino Acid:
VFYPEYSVSLRFHDGLLNVK
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.2
76.2
39.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
84.8
0.78
0.7
77.9
36.6
Minor 5ss
49.5
-0
2.6
69.3
41.4
Minor BPS
42
-0.5
2.7
64.94
46

Associated Gene:

Gene:
CAMKMT
Ensembl Gene ID:
ENSAPLG00000008229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037446
28769870 - 28988798
218929
ENSAPLT00000008553
28769870 - 28988947
219078