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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_288208_289480_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
288208 - 289480
Intron Length:
1273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGATG
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
CCTGCTAGAAGA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
67.8
42.7
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
42.1
-0.9
3.1
53.6
44.9
Minor BPS
41
-0.6
2
48.12
42.7

Associated Gene:

Gene:
SLX4IP
Ensembl Gene ID:
ENSAPLG00000009267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036500
213038 - 289630
76593