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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28877024_28946275_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28877024 - 28946275
Intron Length:
69252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTAGT
5'SS Class:
major
3'SS Sequence:
TTTTGTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TGTTCTAAGAAT
Flanking Amino Acid:
MGLWPAEEVLA
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
72.7
44.5
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
85.6
0.8
0.9
79.9
37.7
Minor 5ss
35.6
-1.6
3.1
42.2
44.7
Minor BPS
46.4
-0.2
2
69.84
41

Associated Gene:

Gene:
CAMKMT
Ensembl Gene ID:
ENSAPLG00000008229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027076
28876818 - 28988947
112130
ENSAPLT00000026205
28784512 - 28988798
204287
ENSAPLT00000032027
28877020 - 29011030
134011