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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28946337_28949280_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28946337 - 28949280
Intron Length:
2944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGAGT
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GGTTCTACCATT
Flanking Amino Acid:
YYCLKHNEIFRDLAVCELGG
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.9
44.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
32.3
-2
3.5
48.9
46.9
Minor BPS
43.2
-0.4
2.1
62.64
41.6

Associated Gene:

Gene:
CAMKMT
Ensembl Gene ID:
ENSAPLG00000008229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032027
28877020 - 29011030
134011
ENSAPLT00000027076
28876818 - 28988947
112130
ENSAPLT00000026205
28784512 - 28988798
204287
ENSAPLT00000008553
28769870 - 28988947
219078
ENSAPLT00000037446
28769870 - 28988798
218929