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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28949336_28950385_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28949336 - 28950385
Intron Length:
1050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTCTT
5'SS Class:
major
3'SS Sequence:
CTCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TATTTGCTCATT
Flanking Amino Acid:
GGMTCLAGLMVAISADVKEV
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
74.5
41.9
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
92.2
0.95
0.6
91.3
20.3
Minor 5ss
38.9
-1.2
3.4
55.1
43.5
Minor BPS
43
-0.4
2.5
68.95
42.5

Associated Gene:

Gene:
CAMKMT
Ensembl Gene ID:
ENSAPLG00000008229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027076
28876818 - 28988947
112130
ENSAPLT00000026205
28784512 - 28988798
204287
ENSAPLT00000008553
28769870 - 28988947
219078
ENSAPLT00000037446
28769870 - 28988798
218929
ENSAPLT00000032027
28877020 - 29011030
134011