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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28955686_28969254_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28955686 - 28969254
Intron Length:
13569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
GIFKAQKVSSCILRWDNETD
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
75.7
34.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.4
0.86
0.6
82.3
29.8
Minor 5ss
41.4
-1
3.3
55.7
43.3
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
CAMKMT
Ensembl Gene ID:
ENSAPLG00000008229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027076
28876818 - 28988947
112130
ENSAPLT00000026205
28784512 - 28988798
204287
ENSAPLT00000008553
28769870 - 28988947
219078
ENSAPLT00000037446
28769870 - 28988798
218929
ENSAPLT00000032027
28877020 - 29011030
134011