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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28969330_28976215_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28969330 - 28976215
Intron Length:
6886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCAATGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTCTTCTCAATG
Flanking Amino Acid:
GHFDIVMCADCLFLDQYRAS
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.6
0.49
1
70.7
38.8
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
56
0.05
1.7
58.48
44.1

Associated Gene:

Gene:
CAMKMT
Ensembl Gene ID:
ENSAPLG00000008229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027076
28876818 - 28988947
112130
ENSAPLT00000026205
28784512 - 28988798
204287
ENSAPLT00000008553
28769870 - 28988947
219078
ENSAPLT00000037446
28769870 - 28988798
218929
ENSAPLT00000032027
28877020 - 29011030
134011