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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28976280_28982451_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28976280 - 28982451
Intron Length:
6172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTACCGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTCTTTTTACC
Flanking Amino Acid:
DAIKRLLQPSGKAMVFAPLR
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74.7
41.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.9
0.65
0.9
69.6
41.4
Minor 5ss
41.3
-1
2.8
52.3
44.3
Minor BPS
57
0.2
1.6
67.16
38.7

Associated Gene:

Gene:
CAMKMT
Ensembl Gene ID:
ENSAPLG00000008229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027076
28876818 - 28988947
112130
ENSAPLT00000026205
28784512 - 28988798
204287
ENSAPLT00000008553
28769870 - 28988947
219078
ENSAPLT00000037446
28769870 - 28988798
218929
ENSAPLT00000032027
28877020 - 29011030
134011