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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28982584_28988720_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28982584 - 28988720
Intron Length:
6137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTGCTTACTT
Flanking Amino Acid:
DEHISNFHSKLKNEEKDTYD
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.4
0.98
0.7
89.1
26.3
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
59.5
0.38
2.1
80.32
42.1

Associated Gene:

Gene:
CAMKMT
Ensembl Gene ID:
ENSAPLG00000008229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037446
28769870 - 28988798
218929
ENSAPLT00000027076
28876818 - 28988947
112130
ENSAPLT00000026205
28784512 - 28988798
204287
ENSAPLT00000008553
28769870 - 28988947
219078