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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_28982584_29010976_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28982584 - 29010976
Intron Length:
28393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGATATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTGATA
Flanking Amino Acid:
DEHISNFHSKGKKQKISRGQ
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.7
0.69
0.9
77.3
36.2
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
74.5
0.76
1
81.02
27.4

Associated Gene:

Gene:
CAMKMT
Ensembl Gene ID:
ENSAPLG00000008229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032027
28877020 - 29011030
134011