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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29070388_29076888_R

Intron Information:

Intron Rank:
132093
Intron Class:
major
Intron Phase:
Intron Coordinates:
29070388 - 29076888
Intron Length:
6501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GTTATTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCAGCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
74
36.6
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
82.6
0.73
0.9
73.7
41.7
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
42.5
-0.5
2.6
73.15
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018312
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020088
29070380 - 29081263
10884