Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29097629_29115564_R

Intron Information:

Intron Rank:

138006

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

29097629 - 29115564

Intron Length:

17936

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTTTC

5'SS Class:

major

3'SS Sequence:

TTTGCAAGAATAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTGATTTTGATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.62

1.1

75.6

35.1

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

57.4

0.17

1.1

52.8

40.6

Minor 5ss

47.7

-0.2

2.8

71.6

38.3

Minor BPS

61.3

0.44

1.2

74.35

37.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021775

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018500

29095742 - 29116125

20384