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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29186944_29192703_F

Intron Information:

Intron Rank:
124222
Intron Class:
major
Intron Phase:
Intron Coordinates:
29186944 - 29192703
Intron Length:
5760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
CCTCTCTGATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATCTTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.5
37
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.8
0.45
1
69.5
35.4
Minor 5ss
33
-1.9
2.7
39.5
38.8
Minor BPS
68.2
0.65
1.3
78.79
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016962
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028222
29186031 - 29206058
20028