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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29204808_29205905_F

Intron Information:

Intron Rank:
124224
Intron Class:
major
Intron Phase:
Intron Coordinates:
29204808 - 29205905
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTTTTCTCAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.4
1.09
0.7
87
30
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
85.1
0.79
0.7
77.5
31.2
Minor 5ss
35.1
-1.7
2.7
41.5
45.1
Minor BPS
62.7
0.48
1.8
83.82
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016962
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028222
29186031 - 29206058
20028