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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29267294_29269259_R

Intron Information:

Intron Rank:
132272
Intron Class:
major
Intron Phase:
Intron Coordinates:
29267294 - 29269259
Intron Length:
1966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTCCCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CATTTAATGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.3
0.55
0.8
65.8
34.9
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
48.7
-0
1.9
69.8
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018433
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026219
29267225 - 29270089
2865