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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29269301_29269738_R

Intron Information:

Intron Rank:
132273
Intron Class:
major
Intron Phase:
Intron Coordinates:
29269301 - 29269738
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTATGCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGACTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
100
1.24
0.5
100
0
Major PPT
76.8
0.6
1
69.6
40.8
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
49.1
0.01
1.7
66.21
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018433
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026219
29267225 - 29270089
2865