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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29290830_29291805_R

Intron Information:

Intron Rank:
154388
Intron Class:
major
Intron Phase:
Intron Coordinates:
29290830 - 29291805
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTACTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
AATTTCTCACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
34.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
76.3
0.59
1
70.4
40
Minor 5ss
29.3
-2.4
3.3
29.9
43.1
Minor BPS
48.8
-0
1.9
69
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030585
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031951
29290331 - 29292630
2300