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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29342249_29346510_R

Intron Information:

Intron Rank:
141241
Intron Class:
major
Intron Phase:
Intron Coordinates:
29342249 - 29346510
Intron Length:
4262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACATGCA
5'SS Class:
major
3'SS Sequence:
CTTCCACTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTTAT
U12 Branch Point Sequence:
ATCCCTTCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
68.6
36.5
Major BPS
65.9
0.39
1.2
57.6
41.3
Major PPT
67.9
0.4
1
64.6
35.8
Minor 5ss
31.3
-2.1
3.4
41.7
44.9
Minor BPS
48
-0
2
67.82
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023334
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021023
29341330 - 29346516
5187