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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29347346_29347799_R

Intron Information:

Intron Rank:
129539
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
29347346 - 29347799
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAAAG
5'SS Class:
major
3'SS Sequence:
GTCTGTGATGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TACTGATGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
66.7
38.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
56.6
0.15
1.2
56.2
42.9
Minor 5ss
38.3
-1.3
2.9
48
47.7
Minor BPS
48.8
-0
2.1
71.44
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016896
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039341
29346537 - 29356347
9811
ENSAPLT00000023932
29346537 - 29368290
21754
ENSAPLT00000046787
29346537 - 29351894
5358