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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29347940_29351478_R

Intron Information:

Intron Rank:
129546
Intron Class:
major
Intron Phase:
Intron Coordinates:
29347940 - 29351478
Intron Length:
3539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTTG
5'SS Class:
major
3'SS Sequence:
TTATTTCACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTATCTTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.6
40.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
72.9
0.51
0.9
67.1
39.3
Minor 5ss
47.5
-0.2
2.8
64.6
46.7
Minor BPS
71.5
0.67
1.5
79.94
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016896
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046787
29346537 - 29351894
5358