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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29384584_29387153_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29384584 - 29387153
Intron Length:
2570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACCCT
5'SS Class:
major
3'SS Sequence:
TTTCTTATAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTTATAACA
Flanking Amino Acid:
TQPEGFDIRTDFDKPDFKRS
Intron Amino Acid Position:
849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
68.7
42.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.5
0.71
0.9
78.1
33.7
Minor 5ss
39.9
-1.1
3.2
57.5
46.7
Minor BPS
64
0.43
1.6
77.35
32.8

Associated Gene:

Gene:
SRBD1
Ensembl Gene ID:
ENSAPLG00000006313
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031445
29383646 - 29504603
120958
ENSAPLT00000006571
29384294 - 29504603
120310
ENSAPLT00000045539
29384256 - 29505595
121340
ENSAPLT00000038221
29383646 - 29504603
120958