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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29399191_29405611_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29399191 - 29405611
Intron Length:
6421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TGATTTCTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CATCTTTTGATT
Flanking Amino Acid:
DINICSEILLSSKKTQIGSQ
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79.3
31.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
72.9
0.52
1
69
41.8
Minor 5ss
28.1
-2.5
2.7
31.6
42.6
Minor BPS
57.4
0.31
1.2
68.1
37.3

Associated Gene:

Gene:
SRBD1
Ensembl Gene ID:
ENSAPLG00000006313
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038221
29383646 - 29504603
120958