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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29435872_29449342_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29435872 - 29449342
Intron Length:
13471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCTTCTAATT
Flanking Amino Acid:
PDLDPNLRSAVSIARRVQDP
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
74.2
37.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
89.7
0.89
0.7
88.1
28.7
Minor 5ss
45.8
-0.4
2.9
65.2
46
Minor BPS
61.7
0.44
1.6
81.49
34

Associated Gene:

Gene:
SRBD1
Ensembl Gene ID:
ENSAPLG00000006313
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038221
29383646 - 29504603
120958
ENSAPLT00000031445
29383646 - 29504603
120958
ENSAPLT00000006571
29384294 - 29504603
120310
ENSAPLT00000045539
29384256 - 29505595
121340