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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2947498_2948190_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2947498 - 2948190
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGATGT
5'SS Class:
major
3'SS Sequence:
CATGGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
CTGCCCCTAATG
Flanking Amino Acid:
LPPRVKDMHKVSSVLRGFLD
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.3
72.5
39.9
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
69.2
0.43
1
61.2
44.3
Minor 5ss
35.1
-1.7
3.1
48.5
47
Minor BPS
52.1
-0
1.8
57.38
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017662
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039127
2945844 - 2948346
2503