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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29476748_29477800_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
29476748 - 29477800
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
ACCCCACGCAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
TTTTTTCTACCC
Flanking Amino Acid:
EKIKRLLQQFNCSTVVIGNG
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
75.7
29.3
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
48.3
-0
1
44.2
29.2
Minor 5ss
47.3
-0.3
2.5
57.4
41.7
Minor BPS
55.4
0.15
1.9
74.1
37

Associated Gene:

Gene:
SRBD1
Ensembl Gene ID:
ENSAPLG00000006313
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031445
29383646 - 29504603
120958
ENSAPLT00000006571
29384294 - 29504603
120310
ENSAPLT00000045539
29384256 - 29505595
121340
ENSAPLT00000038221
29383646 - 29504603
120958