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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29479326_29490740_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29479326 - 29490740
Intron Length:
11415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGCATG
5'SS Class:
major
3'SS Sequence:
TCATCTCTCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGATGTTTAATT
Flanking Amino Acid:
NEFCWWCVNERSKLTSDAEK
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.3
65.3
46
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
65.7
0.35
1
63.9
36.9
Minor 5ss
44.5
-0.6
2.6
57.4
46.9
Minor BPS
63.1
0.49
1.7
77.22
39.7

Associated Gene:

Gene:
SRBD1
Ensembl Gene ID:
ENSAPLG00000006313
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006571
29384294 - 29504603
120310