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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29486726_29490740_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29486726 - 29490740
Intron Length:
4015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGCATG
5'SS Class:
major
3'SS Sequence:
TGTTCTTATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CATTTTTTGATT
Flanking Amino Acid:
NEFCWWCVNERWRPKQFLKP
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.3
65.3
46
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82
0.72
0.9
77.5
35.8
Minor 5ss
44.5
-0.6
2.6
57.4
46.9
Minor BPS
65.1
0.56
1.2
74.42
37.1

Associated Gene:

Gene:
SRBD1
Ensembl Gene ID:
ENSAPLG00000006313
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045539
29384256 - 29505595
121340
ENSAPLT00000038221
29383646 - 29504603
120958
ENSAPLT00000031445
29383646 - 29504603
120958