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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29490845_29495497_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29490845 - 29495497
Intron Length:
4653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACCTT
5'SS Class:
major
3'SS Sequence:
TGTTTGCACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TATGTTTGCACT
Flanking Amino Acid:
CNIKNIQHHQILAINRGENL
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
67.7
43.2
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
72.7
0.51
1
70.3
40.4
Minor 5ss
49.2
-0
2.9
73.5
43.2
Minor BPS
47.2
-0.1
2
69
42.3

Associated Gene:

Gene:
SRBD1
Ensembl Gene ID:
ENSAPLG00000006313
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045539
29384256 - 29505595
121340
ENSAPLT00000038221
29383646 - 29504603
120958
ENSAPLT00000031445
29383646 - 29504603
120958
ENSAPLT00000006571
29384294 - 29504603
120310