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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29499758_29500837_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29499758 - 29500837
Intron Length:
1080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTATGTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TAACTGTTAATA
Flanking Amino Acid:
REVQQTLEELRSVAKKTHTM
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.3
37.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
79.3
0.66
0.9
77
37.1
Minor 5ss
35.6
-1.6
2.7
43.3
43.8
Minor BPS
49.9
-0
2
62.47
37.7

Associated Gene:

Gene:
SRBD1
Ensembl Gene ID:
ENSAPLG00000006313
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006571
29384294 - 29504603
120310
ENSAPLT00000045539
29384256 - 29505595
121340
ENSAPLT00000038221
29383646 - 29504603
120958
ENSAPLT00000031445
29383646 - 29504603
120958