Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29501005_29502457_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29501005 - 29502457

Intron Length:

1453

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTGTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCTT

U12 Branch Point Sequence:

TTTCTTGTTACA

Flanking Amino Acid:

EFEMNWDIVQVLSERTNVEP

Intron Amino Acid Position:

205

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

76.8

31.7

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

88.4

0.86

0.8

83.5

31.6

Minor 5ss

38.2

-1.3

3.4

55.2

Minor BPS

47.3

-0.2

2.2

67.8

38.6

Associated Gene:

Gene:

SRBD1

Ensembl Gene ID:

ENSAPLG00000006313

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031445

29383646 - 29504603

120958

ENSAPLT00000006571

29384294 - 29504603

120310

ENSAPLT00000045539

29384256 - 29505595

121340

ENSAPLT00000038221

29383646 - 29504603

120958