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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29504061_29504520_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29504061 - 29504520
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGATTA
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TATTGTTTACTT
Flanking Amino Acid:
EDDELSPFLNSSSESEEEEE
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.3
70.5
36.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
87.2
0.84
0.8
84.6
36
Minor 5ss
43
-0.8
3.1
57
42
Minor BPS
55
0.24
2
76.34
41.1

Associated Gene:

Gene:
SRBD1
Ensembl Gene ID:
ENSAPLG00000006313
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031445
29383646 - 29504603
120958
ENSAPLT00000006571
29384294 - 29504603
120310
ENSAPLT00000045539
29384256 - 29505595
121340
ENSAPLT00000038221
29383646 - 29504603
120958