Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29551807_29652150_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29551807 - 29652150

Intron Length:

100344

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGATTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTCTTTTAATT

Flanking Amino Acid:

QNGSRHFEDWIDLEPEGRVY

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

81.3

32.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

82.9

0.74

0.9

77.4

35.6

Minor 5ss

32.7

-2

3.4

40.8

45.4

Minor BPS

77.3

0.94

88.63

29.6

Associated Gene:

Gene:

PRKCE

Ensembl Gene ID:

ENSAPLG00000006475

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043547

29551459 - 29842123

290665

ENSAPLT00000006760

29551459 - 29832269

280811