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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2962495_2962580_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2962495 - 2962580
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
CCCCACCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CCCCCCCCACCC
Flanking Amino Acid:
AYTLKLFFLKEGHNTSRGQE
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
64.8
0.33
0.8
57.2
26.6
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
39.8
-0.7
2
44.52
43.6

Associated Gene:

Gene:
LAMP5
Ensembl Gene ID:
ENSAPLG00000014591
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015208
2953950 - 2963355
9406