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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2962713_2962877_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2962713 - 2962877
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TCCCCGCTCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAG
U12 Branch Point Sequence:
CCCCGCTCAGCC
Flanking Amino Acid:
YDVWASNYVDLITEQADIPL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.2
40.8
Major BPS
47.4
-0.1
1.6
54.7
43.1
Major PPT
66.7
0.38
0.8
60.9
29.2
Minor 5ss
29.1
-2.4
3.1
35.7
41.3
Minor BPS
40
-0.7
2
43.44
44.2

Associated Gene:

Gene:
LAMP5
Ensembl Gene ID:
ENSAPLG00000014591
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015208
2953950 - 2963355
9406