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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29734212_29736441_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29734212 - 29736441
Intron Length:
2230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGAAT
U12 Branch Point Sequence:
TTAGAATGAAAT
Flanking Amino Acid:
GLKKQETHDEQVGSQRFSVN
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
62.9
0.32
1.5
72.3
40.4
Major PPT
93.2
0.97
0.6
92.1
18.5
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
44.7
-0.3
2
65.91
43.5

Associated Gene:

Gene:
PRKCE
Ensembl Gene ID:
ENSAPLG00000006475
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043547
29551459 - 29842123
290665
ENSAPLT00000006760
29551459 - 29832269
280811