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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2974309_2975938_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2974309 - 2975938
Intron Length:
1630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GTATTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATGGACA
Flanking Amino Acid:
KSIKNKAERERRVRELNSSN
Intron Amino Acid Position:
1105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.9
25.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.5
0.73
0.8
81.4
36.1
Minor 5ss
37
-1.5
2.6
46.5
41.8
Minor BPS
58.5
0.26
1.8
72.61
39

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583