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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2976041_2980381_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2976041 - 2980381
Intron Length:
4341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TGATTTTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTCTATTTGATT
Flanking Amino Acid:
QTQQLKFSHDRESKEMRANQ
Intron Amino Acid Position:
1071

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
69.8
0.45
1
69.6
41.4
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
64.2
0.53
1.5
79.4
37.2

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583