Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2980558_2986340_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2980558 - 2986340

Intron Length:

5783

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TCCTTCTCTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGAGAA

U12 Branch Point Sequence:

TCCTTCTCTACA

Flanking Amino Acid:

QALTSDHKSKVKEIVAQHTK

Intron Amino Acid Position:

1013

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

83.2

30.8

Major BPS

-0.1

1.2

42.1

39.2

Major PPT

85.2

0.79

0.7

79.7

25.9

Minor 5ss

38.7

-1.3

2.8

48.1

47.6

Minor BPS

49.9

-0

1.9

62.72

43.5

Associated Gene:

Gene:

PLCB4

Ensembl Gene ID:

ENSAPLG00000013577

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014232

2968731 - 3058313

89583