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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29824720_29841558_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29824720 - 29841558
Intron Length:
16839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCACATTATTT
Flanking Amino Acid:
KIKPPFKPRIKTKRDVNNFD
Intron Amino Acid Position:
696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
70.9
39.2
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
88.6
0.87
0.6
89
20.1
Minor 5ss
38.7
-1.3
2.8
51.8
39.1
Minor BPS
52.7
0.16
1.9
73.79
43.2

Associated Gene:

Gene:
PRKCE
Ensembl Gene ID:
ENSAPLG00000006475
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043547
29551459 - 29842123
290665