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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2986417_2990636_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2986417 - 2990636
Intron Length:
4220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ACATTTTCAATT
Flanking Amino Acid:
KMLEKAIKKKGGSNCVELKK
Intron Amino Acid Position:
987

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.1
34.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.2
0.79
0.7
84.8
30
Minor 5ss
37.8
-1.4
3
42.5
44.6
Minor BPS
54.9
0.23
1.5
66.56
38.9

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583