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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29933602_29938030_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29933602 - 29938030
Intron Length:
4429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTACC
5'SS Class:
major
3'SS Sequence:
TTTTACCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTCTTTTACCT
Flanking Amino Acid:
EADHPASSLAGSSSERRKEK
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
70.2
38.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76.8
0.6
1
70.3
41
Minor 5ss
35.2
-1.7
2.9
38
39.8
Minor BPS
60.3
0.4
1.6
76.22
41

Associated Gene:

Gene:
EPAS1
Ensembl Gene ID:
ENSAPLG00000007160
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039651
29933564 - 29973325
39762